If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ), 'gf_id' => 'HOM05D000608', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000608' ), 'data_identifier' => 'HOM05D000608', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000608', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '930', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18570' => 'bna', 'A02p31840' => 'bna', 'A02p37960' => 'bna', 'A03p30440' => 'bna', 'A03p49580' => 'bna', 'A03p57850' => 'bna', 'A06p11050' => 'bna', 'A06p13890' => 'bna', 'A06p38480' => 'bna', 'A07p29900' => 'bna', 'A07p39160' => 'bna', 'A08p30720' => 'bna', 'A08p37290' => 'bna', 'A09p02760' => 'bna', 'A09p06980' => 'bna', 'A09p61630' => 'bna', 'A10p02130' => 'bna', 'Aa31LG10G6090' => 'aar', 'Aa31LG10G6100' => 'aar', 'Aa31LG11G2810' => 'aar', 'Aa31LG11G8190' => 'aar', 'Aa31LG1G20940' => 'aar', 'Aa31LG2G8650' => 'aar', 'Aa31LG4G3500' => 'aar', 'Aa31LG5G2880' => 'aar', 'Aa31LG8G3920' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.722' => 'aag', 'Actinidia01431' => 'ach', 'Actinidia09873' => 'ach', 'Actinidia11066' => 'ach', 'Actinidia14920' => 'ach', 'Actinidia16027' => 'ach', 'Actinidia16681' => 'ach', 'Actinidia16682' => 'ach', 'Actinidia18652' => 'ach', 'Actinidia21019' => 'ach', 'Actinidia21020' => 'ach', 'Actinidia21427' => 'ach', 'Actinidia26693' => 'ach', 'Actinidia27595' => 'ach', 'Actinidia38366' => 'ach', 'Ah.01g004370' => 'amhyb', 'Ah.02g127730' => 'amhyb', 'Ah.04g155110' => 'amhyb', 'Ah.13g072180' => 'amhyb', 'AL1G13110' => 'aly', 'AL1G27100' => 'aly', 'AL1G30190' => 'aly', 'AL2G22790' => 'aly', 'AL2G32980' => 'aly', 'AL3G19550' => 'aly', 'AL5G10210' => 'aly', 'AL5G10330' => 'aly', 'AL6G18800' => 'aly', 'AL6G34640' => 'aly', 'AL6G49450' => 'aly', 'AL7G24450' => 'aly', 'AL7G39080' => 'aly', 'AL8G22840' => 'aly', 'Aqoxy2G01282' => 'aox', 'Aqoxy2G02852' => 'aox', 'Aqoxy3G00211' => 'aox', 'Aqoxy4G01222' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02L9SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F61Q2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46SZIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61PIUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.901AMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94K4CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UI6N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AB233E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFP4RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYJH8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5UVUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPSG4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKP2YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5LUP6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9AKH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8F2IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA7CI8' => 'arhy', 'AT1G03610' => 'ath', 'AT1G15030' => 'ath', 'AT1G17830' => 'ath', 'AT1G73210' => 'ath', 'AT2G01260' => 'ath', 'AT4G03420' => 'ath', 'AT4G16100' => 'ath', 'AT4G28150' => 'ath', 'AT5G08360' => 'ath', 'AT5G23380' => 'ath', 'AT5G49220' => 'ath', 'ATR0124G051' => 'atr', 'ATR0706G011' => 'atr', 'ATR0706G026' => 'atr', 'ATR1125G018' => 'atr', 'ATR1125G049' => 'atr', 'ATR1149G088' => 'atr', 'ATR1149G090' => 'atr', 'Atru.chr11.14' => 'acertr', 'Atru.chr11.214' => 'acertr', 'Atru.chr11.215' => 'acertr', 'Atru.chr4.2938' => 'acertr', 'Atru.chr5.1076' => 'acertr', 'Atru.chr6.3033' => 'acertr', 'Atru.chr9.61' => 'acertr', 'Atru.chr9.897' => 'acertr', 'AUR62002823' => 'cqu', 'AUR62016158' => 'cqu', 'AUR62035072' => 'cqu', 'AUR62037286' => 'cqu', 'AUR62037348' => 'cqu', 'AUR62042602' => 'cqu', 'BcaB01g01948' => 'bca', 'BcaB01g02533' => 'bca', 'BcaB01g02534' => 'bca', 'BcaB02g06568' => 'bca', 'BcaB02g06572' => 'bca', 'BcaB02g06914' => 'bca', 'BcaB04g19871' => 'bca', 'BcaB07g30413' => 'bca', 'BcaB07g34007' => 'bca', 'BcaB07g34143' => 'bca', 'BcaC01g06679' => 'bca', 'BcaC03g17017' => 'bca', 'BcaC03g17709' => 'bca', 'BcaC04g23492' => 'bca', 'BcaC04g23972' => 'bca', 'BcaC05g24518' => 'bca', 'BcaC06g30705' => 'bca', 'BcaC06g32642' => 'bca', 'BcaC06g32982' => 'bca', 'BcaC06g32983' => 'bca', 'BcaC06g32984' => 'bca', 'BcaC06g33470' => 'bca', 'BcaC07g36952' => 'bca', 'BcaC07g38885' => 'bca', 'BcaC07g38886' => 'bca', 'BcaC08g45662' => 'bca', 'BcaNung02591' => 'bca', 'BcaNung06734' => 'bca', 'BolC2t06314H' => 'bol', 'BolC2t09129H' => 'bol', 'BolC2t11015H' => 'bol', 'BolC2t11787H' => 'bol', 'BolC3t15991H' => 'bol', 'BolC5t28982H' => 'bol', 'BolC5t30054H' => 'bol', 'BolC5t30323H' => 'bol', 'BolC6t38538H' => 'bol', 'BolC6t39774H' => 'bol', 'BolC7t44504H' => 'bol', 'BolC7t45287H' => 'bol', 'BolC7t46076H' => 'bol', 'BolC8t46869H' => 'bol', 'BolC8t49455H' => 'bol', 'BolC8t52069H' => 'bol', 'BolC9t53209H' => 'bol', 'BolC9t53694H' => 'bol', 'BraA02t06894Z' => 'bra', 'BraA02t08193Z' => 'bra', 'BraA02t08780Z' => 'bra', 'BraA03t12225Z' => 'bra', 'BraA03t14055Z' => 'bra', 'BraA03t14849Z' => 'bra', 'BraA06t24285Z' => 'bra', 'BraA06t24530Z' => 'bra', 'BraA06t26763Z' => 'bra', 'BraA07t30628Z' => 'bra', 'BraA07t31465Z' => 'bra', 'BraA08t35002Z' => 'bra', 'BraA08t35626Z' => 'bra', 'BraA09t35918Z' => 'bra', 'BraA09t36346Z' => 'bra', 'BraA09t41535Z' => 'bra', 'BraA10t42483Z' => 'bra', 'C02p30740' => 'bna', 'C02p49260' => 'bna', 'C02p57160' => 'bna', 'C03p36770' => 'bna', 'C05p02040' => 'bna', 'C05p13180' => 'bna', 'C05p16210' => 'bna', 'C06p34170' => 'bna', 'C06p47350' => 'bna', 'C07p39780' => 'bna', 'C07p47640' => 'bna', 'C07p55990' => 'bna', 'C08p00710' => 'bna', 'C08p18200' => 'bna', 'C08p45210' => 'bna', 'C09p02830' => 'bna', 'C09p07780' => 'bna', 'CAN.G14.6' => 'can', 'CAN.G140.51' => 'can', 'CAN.G1655.10' => 'can', 'CAN.G248.46' => 'can', 'CAN.G486.5' => 'can', 'CAN.G610.30' => 'can', 'CAN.G668.37' => 'can', 'CAN.G902.4' => 'can', 'CANSAT01G0733' => 'cansat', 'CANSAT25G0645' => 'cansat', 'CANSAT64G0081' => 'cansat', 'CANSAT78G0250' => 'cansat', 'CANSAT80G1125' => 'cansat', 'CARHR002950' => 'chi', 'CARHR015570' => 'chi', 'CARHR018440' => 'chi', 'CARHR066220' => 'chi', 'CARHR114900' => 'chi', 'CARHR114910' => 'chi', 'CARHR143790' => 'chi', 'CARHR182420' => 'chi', 'CARHR204710' => 'chi', 'CARHR235860' => 'chi', 'CARHR251820' => 'chi', 'CARHR290730' => 'chi', 'Carub.0001s0273' => 'cru', 'Carub.0001s1480' => 'cru', 'Carub.0001s1756' => 'cru', 'Carub.0002s2001' => 'cru', 'Carub.0005s0024' => 'cru', 'Carub.0006s0726' => 'cru', 'Carub.0006s2116' => 'cru', 'Carub.0006s3364' => 'cru', 'Carub.0007s1262' => 'cru', 'Carub.0007s2551' => 'cru', 'Carub.0008s0905' => 'cru', 'Ca_01512_v3' => 'car', 'Ca_01886_v3' => 'car', 'Ca_04889_v3' => 'car', 'Ca_05303_v3' => 'car', 'Ca_09922_v3' => 'car', 'Ca_10309_v3' => 'car', 'Ca_10311_v3' => 'car', 'Ca_11129_v3' => 'car', 'Ca_11585_v3' => 'car', 'Ca_21463_v3' => 'car', 'Ca_25475_v3' => 'car', 'Ca_29867_v3' => 'car', 'Cc01_g21180' => 'ccan', 'Cc03_g01260' => 'ccan', 'Cc05_g06780' => 'ccan', 'Cc11_g03410' => 'ccan', 'Cc11_g09720' => 'ccan', 'CDE02G0832' => 'cde', 'CDE04G1683' => 'cde', 'CDE04G1808' => 'cde', 'CDE06G0067' => 'cde', 'CDE07G0540' => 'cde', 'CDE08G0882' => 'cde', 'CDE08G1228' => 'cde', 'CDE08G1376' => 'cde', 'CDE09G0161' => 'cde', 'CDE12G0289' => 'cde', 'Cfa014569' => 'cfa', 'Cfa015470' => 'cfa', 'Cfa015844' => 'cfa', 'Cfa017819' => 'cfa', 'Cfa019738' => 'cfa', 'Ciclev10005076m.g' => 'ccl', 'Ciclev10015520m.g' => 'ccl', 'Ciclev10015991m.g' => 'ccl', 'Ciclev10020420m.g' => 'ccl', 'Ciclev10020424m.g' => 'ccl', 'Ciclev10021039m.g' => 'ccl', 'CiPaw.01G197900' => 'cil', 'CiPaw.02G077900' => 'cil', 'CiPaw.03G173200' => 'cil', 'CiPaw.04G124000' => 'cil', 'CiPaw.05G241200' => 'cil', 'CiPaw.15G133900' => 'cil', 'CiPaw.15G134400' => 'cil', 'CiPaw.15G134700' => 'cil', 'CiPaw.16G077100' => 'cil', 'ClCG01G005880' => 'cla', 'ClCG01G014640' => 'cla', 'ClCG02G001130' => 'cla', 'ClCG02G017460' => 'cla', 'ClCG05G006330' => 'cla', 'ClCG05G022510' => 'cla', 'ClCG06G014620' => 'cla', 'COL.COLO4_06101' => 'col', 'COL.COLO4_08315' => 'col', 'COL.COLO4_23293' => 'col', 'COL.COLO4_23959' => 'col', 'COL.COLO4_34683' => 'col', 'COL.COLO4_35402' => 'col', 'Cpa.g.sc124.8' => 'cpa', 'Cpa.g.sc3.469' => 'cpa', 'Cpa.g.sc65.61' => 'cpa', 'Cpa.g.sc700.1' => 'cpa', 'Cpa.g.sc9.109' => 'cpa', 'CsaV3_1G003990' => 'csa', 'CsaV3_1G007690' => 'csa', 'CsaV3_3G014960' => 'csa', 'CsaV3_5G028810' => 'csa', 'CsaV3_5G034560' => 'csa', 'CsaV3_6G013090' => 'csa', 'CsaV3_7G004310' => 'csa', 'CSS0000860' => 'camsi', 'CSS0009564' => 'camsi', 'CSS0011183' => 'camsi', 'CSS0013484' => 'camsi', 'CSS0019198' => 'camsi', 'CSS0020737' => 'camsi', 'CSS0030631' => 'camsi', 'CSS0035805' => 'camsi', 'CSS0047781' => 'camsi', 'DCAR_000296' => 'dca', 'DCAR_002865' => 'dca', 'DCAR_006247' => 'dca', 'DCAR_007261' => 'dca', 'DCAR_012994' => 'dca', 'DCAR_014764' => 'dca', 'DCAR_014765' => 'dca', 'DCAR_014766' => 'dca', 'DCAR_014767' => 'dca', 'DCAR_014768' => 'dca', 'DCAR_014769' => 'dca', 'DCAR_018302' => 'dca', 'DCAR_019190' => 'dca', 'DCAR_023231' => 'dca', 'DCAR_030177' => 'dca', 'Dinv02062' => 'din', 'Dinv03832' => 'din', 'Dinv09760' => 'din', 'Dinv16125' => 'din', 'Dinv23683' => 'din', 'Dinv28135' => 'din', 'Dinv29692' => 'din', 'Dinv31601' => 'din', 'Dinv44325' => 'din', 'Duzib052G0549' => 'dzi', 'Duzib068G1398' => 'dzi', 'Duzib084G1189' => 'dzi', 'Duzib084G1230' => 'dzi', 'Duzib132G0135' => 'dzi', 'Duzib133G0074' => 'dzi', 'Duzib138G1295' => 'dzi', 'Duzib151G0429' => 'dzi', 'Duzib212G0127' => 'dzi', 'Duzib248G0601' => 'dzi', 'Duzib251G0795' => 'dzi', 'ECA233G1118' => 'eca', 'ECA233G4691' => 'eca', 'ECA236G0057' => 'eca', 'ECA246G2890' => 'eca', 'ECA246G3814' => 'eca', 'ECA246G4958' => 'eca', 'EL10Ac3g04933' => 'bvu', 'EL10Ac6g14319' => 'bvu', 'EL10Ac9g20691' => 'bvu', 'Eucgr.A01794' => 'egr', 'Eucgr.B00823' => 'egr', 'Eucgr.K00948' => 'egr', 'Eucgr.K02341' => 'egr', 'Eucgr.K03514' => 'egr', 'FAN02G2525' => 'fan', 'FAN05G0486' => 'fan', 'FAN07G0324' => 'fan', 'FAN07G1315' => 'fan', 'FAN07G1341' => 'fan', 'FAN09G3746' => 'fan', 'FAN12G1924' => 'fan', 'FAN12G2081' => 'fan', 'FAN12G2096' => 'fan', 'FAN12G2817' => 'fan', 'FAN14G2344' => 'fan', 'FAN17G2764' => 'fan', 'FAN18G0469' => 'fan', 'FAN18G2729' => 'fan', 'FAN22G0024' => 'fan', 'FvH4_4g19180' => 'fve', 'FvH4_4g26790' => 'fve', 'FvH4_5g11720' => 'fve', 'FvH4_5g37821' => 'fve', 'FvH4_6g45060' => 'fve', 'Glyma.05G139200' => 'gma', 'Glyma.06G296102' => 'gma', 'Glyma.07G096367' => 'gma', 'Glyma.07G096433' => 'gma', 'Glyma.07G243400' => 'gma', 'Glyma.08G094500' => 'gma', 'Glyma.09G040300' => 'gma', 'Glyma.09G160100' => 'gma', 'Glyma.09G181300' => 'gma', 'Glyma.10G015966' => 'gma', 'Glyma.10G174900' => 'gma', 'Glyma.10G271100' => 'gma', 'Glyma.12G109600' => 'gma', 'Glyma.12G202600' => 'gma', 'Glyma.13G299100' => 'gma', 'Glyma.16G209500' => 'gma', 'Glyma.17G030500' => 'gma', 'Glyma.20G215900' => 'gma', 'Gohir.A01G016000' => 'ghi', 'Gohir.A01G127400' => 'ghi', 'Gohir.A01G127500' => 'ghi', 'Gohir.A03G158250' => 'ghi', 'Gohir.A03G158300' => 'ghi', 'Gohir.A03G168500' => 'ghi', 'Gohir.A04G104933' => 'ghi', 'Gohir.A08G118300' => 'ghi', 'Gohir.A09G064100' => 'ghi', 'Gohir.A09G236100' => 'ghi', 'Gohir.A11G005000' => 'ghi', 'Gohir.A11G112700' => 'ghi', 'Gohir.A12G051900' => 'ghi', 'Gohir.A12G137400' => 'ghi', 'Gohir.D01G016000' => 'ghi', 'Gohir.D01G114400' => 'ghi', 'Gohir.D02G171750' => 'ghi', 'Gohir.D02G181500' => 'ghi', 'Gohir.D02G191700' => 'ghi', 'Gohir.D04G126050' => 'ghi', 'Gohir.D04G144700' => 'ghi', 'Gohir.D04G150450' => 'ghi', 'Gohir.D08G139260' => 'ghi', 'Gohir.D09G063000' => 'ghi', 'Gohir.D09G236900' => 'ghi', 'Gohir.D11G004300' => 'ghi', 'Gohir.D11G117700' => 'ghi', 'Gohir.D12G050200' => 'ghi', 'Gohir.D12G141400' => 'ghi', 'Gorai.002G017700' => 'gra', 'Gorai.002G075400' => 'gra', 'Gorai.002G139400' => 'gra', 'Gorai.002G139500' => 'gra', 'Gorai.004G143000' => 'gra', 'Gorai.005G193200' => 'gra', 'Gorai.005G204000' => 'gra', 'Gorai.005G214500' => 'gra', 'Gorai.006G077900' => 'gra', 'Gorai.006G259900' => 'gra', 'Gorai.007G005300' => 'gra', 'Gorai.007G126100' => 'gra', 'Gorai.008G053400' => 'gra', 'Gorai.008G152800' => 'gra', 'Gorai.012G109100' => 'gra', 'Gorai.012G130700' => 'gra', 'Gorai.012G137100' => 'gra', 'GSVIVG01008332001' => 'vvi', 'GSVIVG01011848001' => 'vvi', 'GSVIVG01028064001' => 'vvi', 'GSVIVG01030550001' => 'vvi', 'GSVIVG01031684001' => 'vvi', 'GSVIVG01035053001' => 'vvi', 'HanXRQChr02g0049111' => 'han', 'HanXRQChr03g0081751' => 'han', 'HanXRQChr03g0086071' => 'han', 'HanXRQChr03g0089301' => 'han', 'HanXRQChr04g0114651' => 'han', 'HanXRQChr04g0114661' => 'han', 'HanXRQChr06g0167731' => 'han', 'HanXRQChr07g0187041' => 'han', 'HanXRQChr08g0213451' => 'han', 'HanXRQChr11g0322071' => 'han', 'HanXRQChr13g0389551' => 'han', 'HanXRQChr13g0394461' => 'han', 'HanXRQChr14g0459141' => 'han', 'HanXRQChr16g0511281' => 'han', 'HanXRQChr17g0542611' => 'han', 'HanXRQChr17g0552011' => 'han', 'HanXRQChr17g0553341' => 'han', 'HanXRQChr17g0559981' => 'han', 'Haze_00647' => 'cav', 'Haze_01103' => 'cav', 'Haze_13117' => 'cav', 'Haze_18390' => 'cav', 'Haze_18721' => 'cav', 'Hma1.2p1_0078F.1_g040200' => 'hma', 'Hma1.2p1_0494F.1_g165550' => 'hma', 'Hma1.2p1_0875F.1_g231390' => 'hma', 'Hma1.2p1_1024F.1_g249123' => 'hma', 'Hma1.2p1_1283F.1_g272720' => 'hma', 'Hma1.2p1_1283F.1_g272730' => 'hma', 'Hma1.2p1_3860F.1_g337810' => 'hma', 'Hma1.2p1_3860F.1_g337830' => 'hma', 'HPP92_001069' => 'vpl', 'HPP92_002016' => 'vpl', 'HPP92_003253' => 'vpl', 'HPP92_010935' => 'vpl', 'HPP92_014424' => 'vpl', 'HPP92_021591' => 'vpl', 'HPP92_023815' => 'vpl', 'HPP92_027131' => 'vpl', 'Hund01156' => 'sun', 'Hund03093' => 'sun', 'Hund08026' => 'sun', 'Hund11945' => 'sun', 'Hund20748' => 'sun', 'Hund25039' => 'sun', 'Lalb_Chr01g0005351' => 'lal', 'Lalb_Chr02g0145771' => 'lal', 'Lalb_Chr02g0146581' => 'lal', 'Lalb_Chr02g0149671' => 'lal', 'Lalb_Chr03g0029261' => 'lal', 'Lalb_Chr06g0165861' => 'lal', 'Lalb_Chr06g0168721' => 'lal', 'Lalb_Chr10g0096431' => 'lal', 'Lalb_Chr13g0298281' => 'lal', 'Lalb_Chr14g0366781' => 'lal', 'Lalb_Chr14g0370031' => 'lal', 'Lalb_Chr14g0370041' => 'lal', 'Lalb_Chr14g0370051' => 'lal', 'Lalb_Chr17g0338861' => 'lal', 'Lalb_Chr19g0135351' => 'lal', 'Lalb_Chr21g0309401' => 'lal', 'Lalb_Chr21g0311721' => 'lal', 'Lalb_Chr22g0353191' => 'lal', 'Lalb_Chr22g0354131' => 'lal', 'Lalb_Chr22g0356481' => 'lal', 'Lalb_Chr24g0397931' => 'lal', 'Lj1A21G69' => 'lonja', 'Lj1A733T62' => 'lonja', 'Lj2g0001814' => 'lja', 'Lj2g0012251' => 'lja', 'Lj2g0012715' => 'lja', 'Lj3A880T119' => 'lonja', 'Lj3g0017796' => 'lja', 'Lj3g0020176' => 'lja', 'Lj4g0017710' => 'lja', 'Lj4g0023661' => 'lja', 'Lj5A169G98' => 'lonja', 'Lj5g0004159' => 'lja', 'Lj5g0008124' => 'lja', 'Lj5g0025053' => 'lja', 'Lj6A753T57' => 'lonja', 'Lj6C683G6' => 'lonja', 'Lj8A114T41' => 'lonja', 'Lj9C410T5' => 'lonja', 'Lsat_1_v5_gn_0_13081' => 'lsa', 'Lsat_1_v5_gn_0_45701' => 'lsa', 'Lsat_1_v5_gn_1_101101' => 'lsa', 'Lsat_1_v5_gn_1_44521' => 'lsa', 'Lsat_1_v5_gn_2_20321' => 'lsa', 'Lsat_1_v5_gn_3_32361' => 'lsa', 'Lsat_1_v5_gn_3_39500' => 'lsa', 'Lsat_1_v5_gn_3_61501' => 'lsa', 'Lsat_1_v5_gn_3_61660' => 'lsa', 'Lsat_1_v5_gn_5_46841' => 'lsa', 'Lsat_1_v5_gn_6_115040' => 'lsa', 'Lsat_1_v5_gn_6_19501' => 'lsa', 'Lsat_1_v5_gn_7_103160' => 'lsa', 'Lsat_1_v5_gn_7_45220' => 'lsa', 'Lsat_1_v5_gn_8_132400' => 'lsa', 'Lsat_1_v5_gn_8_147341' => 'lsa', 'Lsat_1_v5_gn_8_162201' => 'lsa', 'Lsat_1_v5_gn_8_164601' => 'lsa', 'Lsat_1_v5_gn_8_41320' => 'lsa', 'Lsat_1_v5_gn_9_73681' => 'lsa', 'Manes.01G159500' => 'mes', 'Manes.02G118100' => 'mes', 'Manes.03G200700' => 'mes', 'Manes.05G000600' => 'mes', 'Manes.06G065300' => 'mes', 'Manes.12G084400' => 'mes', 'Manes.13G149100' => 'mes', 'Manes.14G106400' => 'mes', 'Manes.15G007600' => 'mes', 'MBI02_g19259_MAGBIO' => 'mbi', 'MBI06_g37982_MAGBIO' => 'mbi', 'MBI09_g25165_MAGBIO' => 'mbi', 'MBI16_g37132_MAGBIO' => 'mbi', 'MBI16_g41993_MAGBIO' => 'mbi', 'MBI18_g05913_MAGBIO' => 'mbi', 'MBI19_g38159_MAGBIO' => 'mbi', 'MCO16G188' => 'mco', 'MD06G1219600' => 'mdo', 'MD09G1090400' => 'mdo', 'MD13G1035700' => 'mdo', 'MD13G1160300' => 'mdo', 'MD13G1160400' => 'mdo', 'MD16G1037700' => 'mdo', 'MD16G1159600' => 'mdo', 'MD17G1079500' => 'mdo', 'Medtr1g077460' => 'mtr', 'Medtr1g087810' => 'mtr', 'Medtr1g087830' => 'mtr', 'Medtr1g110070' => 'mtr', 'Medtr2g035080' => 'mtr', 'Medtr2g090210' => 'mtr', 'Medtr4g044297' => 'mtr', 'Medtr4g070470' => 'mtr', 'Medtr4g120990' => 'mtr', 'Medtr6g044130' => 'mtr', 'Medtr6g066280' => 'mtr', 'Medtr6g082450' => 'mtr', 'MELO3C002187.2' => 'cme', 'MELO3C005342.2' => 'cme', 'MELO3C006692.2' => 'cme', 'MELO3C012272.2' => 'cme', 'MELO3C013603.2' => 'cme', 'MELO3C017323.2' => 'cme', 'MELO3C018747.2' => 'cme', 'MELO3C034858.2' => 'cme', 'MELO3C035058.2' => 'cme', 'Migut.D00118' => 'egut', 'Migut.E00365' => 'egut', 'Migut.G00114' => 'egut', 'Migut.H01057' => 'egut', 'Migut.L00986' => 'egut', 'Migut.L01031' => 'egut', 'Migut.M00322' => 'egut', 'MSTRG.10125' => 'ama', 'MSTRG.12307' => 'ama', 'MSTRG.14201' => 'ama', 'MSTRG.18130' => 'ama', 'MSTRG.2219' => 'ama', 'MSTRG.24811' => 'ama', 'MSTRG.7644' => 'ama', 'MSTRG.860' => 'ama', 'Nitab4.5_0000116g0230' => 'nta', 'Nitab4.5_0000361g0090' => 'nta', 'Nitab4.5_0000488g0070' => 'nta', 'Nitab4.5_0000616g0090' => 'nta', 'Nitab4.5_0000635g0060' => 'nta', 'Nitab4.5_0000694g0170' => 'nta', 'Nitab4.5_0000998g0060' => 'nta', 'Nitab4.5_0001620g0060' => 'nta', 'Nitab4.5_0002112g0010' => 'nta', 'Nitab4.5_0002473g0080' => 'nta', 'Nitab4.5_0003022g0010' => 'nta', 'Nitab4.5_0003793g0010' => 'nta', 'Nitab4.5_0006422g0010' => 'nta', 'Nitab4.5_0007654g0030' => 'nta', 'Nitab4.5_0009608g0010' => 'nta', 'Nitab4.5_0011680g0010' => 'nta', 'Nitab4.5_0020254g0010' => 'nta', 'Nn1g03989' => 'nnu', 'Nn1g06663' => 'nnu', 'Nn3g21591' => 'nnu', 'Nn4g23940' => 'nnu', 'Oeu006432.1' => 'oeu', 'Oeu010930.1' => 'oeu', 'Oeu011475.1' => 'oeu', 'Oeu017662.1' => 'oeu', 'Oeu029931.1' => 'oeu', 'Oeu034096.1' => 'oeu', 'Oeu041285.1' => 'oeu', 'Oeu048177.1' => 'oeu', 'Oeu048316.1' => 'oeu', 'Oeu048364.1' => 'oeu', 'Oeu054009.1' => 'oeu', 'Oeu054107.1' => 'oeu', 'Oeu057747.1' => 'oeu', 'Oeu057750.1' => 'oeu', 'Oeu057754.1' => 'oeu', 'Oeu058382.1' => 'oeu', 'Oeu062996.1' => 'oeu', 'Os01g0138500' => 'osa', 'Os01g0306900' => 'osa', 'Os01g0513400' => 'osa', 'Os02g0827400' => 'osa', 'Os03g0831300' => 'osa', 'Os04g0528000' => 'osa', 'Os07g0246600' => 'osa', 'Os10g0494000' => 'osa', 'Peaxi162Scf00001g03224' => 'pax', 'Peaxi162Scf00065g00521' => 'pax', 'Peaxi162Scf00132g00067' => 'pax', 'Peaxi162Scf00147g00084' => 'pax', 'Peaxi162Scf00179g00311' => 'pax', 'Peaxi162Scf00206g00019' => 'pax', 'Peaxi162Scf00336g00086' => 'pax', 'Peaxi162Scf00441g00011' => 'pax', 'Peaxi162Scf01191g00004' => 'pax', 'PGR031G3314' => 'pgr', 'PGR042G3768' => 'pgr', 'PGR044G2519' => 'pgr', 'PGR044G2610' => 'pgr', 'PGR083G2877' => 'pgr', 'PGR102G1301' => 'pgr', 'PGR142G0502' => 'pgr', 'PGR142G3995' => 'pgr', 'PGSC0003DMG400007725' => 'stu', 'PGSC0003DMG400007811' => 'stu', 'PGSC0003DMG400015997' => 'stu', 'PGSC0003DMG400017908' => 'stu', 'PGSC0003DMG400018356' => 'stu', 'PGSC0003DMG400021665' => 'stu', 'PGSC0003DMG400025623' => 'stu', 'PGSC0003DMG400030575' => 'stu', 'PGSC0003DMG400031509' => 'stu', 'PGSC0003DMG400031798' => 'stu', 'Phvul.002G182600' => 'pvu', 'Phvul.003G110000' => 'pvu', 'Phvul.004G135500' => 'pvu', 'Phvul.004G154400' => 'pvu', 'Phvul.005G105800' => 'pvu', 'Phvul.007G031400' => 'pvu', 'Phvul.011G113400' => 'pvu', 'Phvul.L006801' => 'pvu', 'Potri.008G124000' => 'ptr', 'Potri.008G213300' => 'ptr', 'Potri.010G000700' => 'ptr', 'Potri.010G120700' => 'ptr', 'Potri.013G144000' => 'ptr', 'Potri.017G155200' => 'ptr', 'Potri.018G152500' => 'ptr', 'Potri.019G103000' => 'ptr', 'Pp3c14_11930' => 'ppa', 'Pp3c17_6820' => 'ppa', 'Pp3c1_25570' => 'ppa', 'Pp3c2_17980' => 'ppa', 'Prupe.1G126800' => 'ppe', 'Prupe.1G316100' => 'ppe', 'Prupe.1G352500' => 'ppe', 'Prupe.3G235200' => 'ppe', 'Prupe.5G224100' => 'ppe', 'Psat0s1646g0040' => 'psa', 'Psat1g035280' => 'psa', 'Psat1g117120' => 'psa', 'Psat1g157800' => 'psa', 'Psat5g053720' => 'psa', 'Psat5g273040' => 'psa', 'Psat6g054320' => 'psa', 'Psat6g163520' => 'psa', 'Psat6g163560' => 'psa', 'Psat6g225080' => 'psa', 'Psat7g189560' => 'psa', 'PSO063G0198' => 'pso', 'PSO170G1858' => 'pso', 'PSO170G3461' => 'pso', 'PSO210G4857' => 'pso', 'PSO357G0445' => 'pso', 'PSO445G0013' => 'pso', 'PSO782G0130' => 'pso', 'PSO832G0501' => 'pso', 'QL01p000158' => 'qlo', 'QL01p000183' => 'qlo', 'QL01p010862' => 'qlo', 'QL01p042220' => 'qlo', 'QL03p032487' => 'qlo', 'QL05p043271' => 'qlo', 'QL05p043319' => 'qlo', 'QL06p011172' => 'qlo', 'QL08p037853' => 'qlo', 'QL10p026430' => 'qlo', 'QL10p035481' => 'qlo', 'QL10p036767' => 'qlo', 'QL12p028656' => 'qlo', 'RcHm_v2.0_Chr2g0162411' => 'rch', 'RcHm_v2.0_Chr4g0424141' => 'rch', 'RcHm_v2.0_Chr4g0434471' => 'rch', 'RcHm_v2.0_Chr4g0447281' => 'rch', 'RcHm_v2.0_Chr7g0186041' => 'rch', 'Rhsim01G0288200' => 'rsi', 'Rhsim04G0066900' => 'rsi', 'Rhsim04G0231500' => 'rsi', 'Rhsim06G0148400' => 'rsi', 'Rhsim09G0104100' => 'rsi', 'RhsimUnG0240600' => 'rsi', 'Sabra08G0149900' => 'sbr', 'Sabra10G0000500' => 'sbr', 'Sabra10G0090600' => 'sbr', 'Sabra10G0090800' => 'sbr', 'Sabra13G0116000' => 'sbr', 'Sabra18G0127500' => 'sbr', 'Sabra19G0113800' => 'sbr', 'SalBow1G5202' => 'sbo', 'SalBow6G3207' => 'sbo', 'SalBow6G6324' => 'sbo', 'SalBow7G4212' => 'sbo', 'SalBow8G0663' => 'sbo', 'SalBow8G1281' => 'sbo', 'SalBow8G1303' => 'sbo', 'SalBow8G1979' => 'sbo', 'SalBow8G2565' => 'sbo', 'Sc04g0006090' => 'sci', 'Sc12g0002850' => 'sci', 'Sc13g0006270' => 'sci', 'Sc13g0006280' => 'sci', 'Sc19g0003400' => 'sci', 'Sed0000523' => 'sed', 'Sed0002548' => 'sed', 'Sed0009341' => 'sed', 'Sed0011594' => 'sed', 'Sed0011781' => 'sed', 'Sed0014890' => 'sed', 'Sed0017597' => 'sed', 'Sed0020883' => 'sed', 'Sed0023073' => 'sed', 'Sed0026767' => 'sed', 'Sed0027964' => 'sed', 'SEGI_02171' => 'sgi', 'SEGI_04901' => 'sgi', 'SEGI_06583' => 'sgi', 'SEGI_30588' => 'sgi', 'SEGI_32281' => 'sgi', 'SGA_v2.0_scaffold109G31099' => 'sas', 'SGA_v2.0_scaffold14G06891' => 'sas', 'SGA_v2.0_scaffold18G08376' => 'sas', 'SGA_v2.0_scaffold290G47286' => 'sas', 'SGA_v2.0_scaffold2G01376' => 'sas', 'SGA_v2.0_scaffold334G49033' => 'sas', 'SGA_v2.0_scaffold38G14985' => 'sas', 'SGA_v2.0_scaffold444G51723' => 'sas', 'SHI00189' => 'shi', 'SMO111G0224' => 'smo', 'Solyc01g006080.2' => 'sly', 'Solyc01g016510.1' => 'sly', 'Solyc01g016530.1' => 'sly', 'Solyc01g016540.3' => 'sly', 'Solyc01g065560.4' => 'sly', 'Solyc05g008920.3' => 'sly', 'Solyc07g054270.3' => 'sly', 'Solyc09g075500.3' => 'sly', 'Solyc10g008480.3' => 'sly', 'Solyc12g010730.2' => 'sly', 'Sopen01g002080' => 'spe', 'Sopen01g010990' => 'spe', 'Sopen01g026950' => 'spe', 'Sopen05g004680' => 'spe', 'Sopen07g028200' => 'spe', 'Sopen09g030300' => 'spe', 'Sopen10g004300' => 'spe', 'Sopen12g005270' => 'spe', 'Sp1g02520' => 'spa', 'Sp1g13420' => 'spa', 'Sp1g15910' => 'spa', 'Sp2g12710' => 'spa', 'Sp2g19600' => 'spa', 'Sp2g23790' => 'spa', 'Sp5g28180' => 'spa', 'Sp6g03480' => 'spa', 'Sp6g34580' => 'spa', 'Sp7g14560' => 'spa', 'Sp7g26100' => 'spa', 'TAR362G1262' => 'tar', 'TAR371G0302' => 'tar', 'TAR374G1180' => 'tar', 'TAR426G0008' => 'tar', 'TAR622G0487' => 'tar', 'TAR622G1085' => 'tar', 'TAR622G1204' => 'tar', 'TAR626G0033' => 'tar', 'TAR626G0802' => 'tar', 'TAR627G0324' => 'tar', 'TAR627G0785' => 'tar', 'TAR629G2330' => 'tar', 'TAR629G2809' => 'tar', 'TAR633G2099' => 'tar', 'TAR633G2761' => 'tar', 'THA.LOC104802595' => 'tha', 'THA.LOC104812197' => 'tha', 'THA.LOC104815957' => 'tha', 'THA.LOC104818383' => 'tha', 'THA.LOC104818901' => 'tha', 'THA.LOC104820723' => 'tha', 'THA.LOC104823937' => 'tha', 'THA.LOC104824154' => 'tha', 'THA.LOC104826029' => 'tha', 'THA.LOC104827081' => 'tha', 'Thecc.01G307200' => 'tca', 'Thecc.02G150800' => 'tca', 'Thecc.02G175800' => 'tca', 'Thecc.02G223100' => 'tca', 'Thecc.03G040200' => 'tca', 'Thecc.04G293700' => 'tca', 'Thhalv10000918m.g' => 'esa', 'Thhalv10004298m.g' => 'esa', 'Thhalv10005438m.g' => 'esa', 'Thhalv10008018m.g' => 'esa', 'Thhalv10008277m.g' => 'esa', 'Thhalv10009965m.g' => 'esa', 'Thhalv10014556m.g' => 'esa', 'Thhalv10018895m.g' => 'esa', 'Thhalv10025362m.g' => 'esa', 'Thhalv10025924m.g' => 'esa', 'Thhalv10028812m.g' => 'esa', 'TPR.G16836' => 'tpr', 'TPR.G21224' => 'tpr', 'TPR.G29483' => 'tpr', 'TPR.G31166' => 'tpr', 'TPR.G31267' => 'tpr', 'TPR.G35543' => 'tpr', 'TPR.G4916' => 'tpr', 'TPR.G5044' => 'tpr', 'TPR.G8846' => 'tpr', 'TPR.G8880' => 'tpr', 'TWI09G0278' => 'twi', 'TWI14G0348' => 'twi', 'TWI31G1419' => 'twi', 'TWI36G1134' => 'twi', 'TWI59G0256' => 'twi', 'TWI60G1153' => 'twi', 'TWI73G0398' => 'twi', 'TWI74G0487' => 'twi', 'TWI75G1372' => 'twi', 'TWI79G1644' => 'twi', 'TWI81G1007' => 'twi', 'unitig_26.g10181' => 'ugi', 'unitig_62.g23180' => 'ugi', 'unitig_699.g19521' => 'ugi', 'unitig_699.g19985' => 'ugi', 'unitig_749.g13752' => 'ugi', 'unitig_749.g13955' => 'ugi', 'unitig_8.g3702' => 'ugi', 'vmacro01396' => 'vma', 'vmacro01397' => 'vma', 'vmacro01398' => 'vma', 'vmacro05743' => 'vma', 'vmacro08082' => 'vma', 'vmacro08085' => 'vma', 'vmacro09274' => 'vma', 'vmacro10598' => 'vma', 'vmacro12274' => 'vma', 'vmacro15130' => 'vma', 'VMungo0251G3409' => 'vmu', 'VMungo0331G0249' => 'vmu', 'VMungo0464G0644' => 'vmu', 'VMungo0464G1433' => 'vmu', 'VMungo0720G0009' => 'vmu', 'VMungo0720G1808' => 'vmu', 'VMungo0720G1975' => 'vmu', 'VMungo1080G0978' => 'vmu', 'VMungo1127G1771' => 'vmu', 'VMungo1215G0064' => 'vmu', 'Zm00001eb044820' => 'zma', 'Zm00001eb063620' => 'zma', 'Zm00001eb075970' => 'zma', 'Zm00001eb097000' => 'zma', 'Zm00001eb124830' => 'zma', 'Zm00001eb130300' => 'zma', 'Zm00001eb211200' => 'zma', 'Zm00001eb221110' => 'zma', 'Zm00001eb288950' => 'zma', 'Zm00001eb304320' => 'zma' ) $gf_id = 'HOM05D000608' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000608' ) $data_identifier = 'HOM05D000608' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 11, 'atr' => (int) 7, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 18, 'bra' => (int) 17, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 11, 'car' => (int) 12, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 9, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 29, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 21, 'lonja' => (int) 8, 'lja' => (int) 10, 'lsa' => (int) 20, 'mes' => (int) 9, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 15, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 10, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb304320' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1